PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01225.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 210aa    MW: 23952.9 Da    PI: 8.0807
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01225.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-204897255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              ykGVr+++ +g+WvAeIr p+    r +r +lg+fgtaeeAa a+++a+ +++g
  Rsa1.0_01225.1_g00002.1 48 LYKGVRQRH-WGKWVAEIRLPK----RrTRLWLGTFGTAEEAALAYDQAAFQIRG 97
                             59******9.**********83....35***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.11E-3247106No hitNo description
SuperFamilySSF541714.05E-2148105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3048106IPR001471AP2/ERF domain
PROSITE profilePS5103222.2648105IPR001471AP2/ERF domain
SMARTSM003801.9E-3648111IPR001471AP2/ERF domain
PfamPF008472.8E-154997IPR001471AP2/ERF domain
PRINTSPR003671.8E-104960IPR001471AP2/ERF domain
PRINTSPR003671.8E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MESKPLGLNQ LTPYQMYQAQ KQLNHRTLSP NRIRTKKLSA SSSNSQKLYK GVRQRHWGKW  60
VAEIRLPKRR TRLWLGTFGT AEEAALAYDQ AAFQIRGDVG KLNFPNIKHE EINSLPSSVD  120
AKLQAICQSL RKTEETCSVS DKTEDICSAA DKTELFLPNT EHIEMNFSDD SPRNDKNSLW  180
DESKLESSSS EHGITFLKFS DSELDEIGRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2047105160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16469RLPKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140335.11e-135PREDICTED: ethylene-responsive transcription factor ERF056
SwissprotQ9SIE41e-101ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLA0A078GLV81e-136A0A078GLV8_BRANA; BnaA04g12700D protein
STRINGBra030255.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.16e-92ERF family protein