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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01225.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23952.9 Da PI: 8.0807 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 48 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr+++ +g+WvAeIr p+ r +r +lg+fgtaeeAa a+++a+ +++g Rsa1.0_01225.1_g00002.1 48 LYKGVRQRH-WGKWVAEIRLPK----RrTRLWLGTFGTAEEAALAYDQAAFQIRG 97 59******9.**********83....35***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.11E-32 | 47 | 106 | No hit | No description |
SuperFamily | SSF54171 | 4.05E-21 | 48 | 105 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 48 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.26 | 48 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-36 | 48 | 111 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-15 | 49 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MESKPLGLNQ LTPYQMYQAQ KQLNHRTLSP NRIRTKKLSA SSSNSQKLYK GVRQRHWGKW 60 VAEIRLPKRR TRLWLGTFGT AEEAALAYDQ AAFQIRGDVG KLNFPNIKHE EINSLPSSVD 120 AKLQAICQSL RKTEETCSVS DKTEDICSAA DKTELFLPNT EHIEMNFSDD SPRNDKNSLW 180 DESKLESSSS EHGITFLKFS DSELDEIGRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-20 | 47 | 105 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 69 | RLPKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140335.1 | 1e-135 | PREDICTED: ethylene-responsive transcription factor ERF056 | ||||
Swissprot | Q9SIE4 | 1e-101 | ERF56_ARATH; Ethylene-responsive transcription factor ERF056 | ||||
TrEMBL | A0A078GLV8 | 1e-136 | A0A078GLV8_BRANA; BnaA04g12700D protein | ||||
STRING | Bra030255.1-P | 1e-135 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2680 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22200.1 | 6e-92 | ERF family protein |